AcrR	acrR	-	[AIBSCS, BCE, BPP, GEA, HIBSCS]	Weak	
AcrR	flhC	-	[GEA, HIBSCS]	Weak	
AcrR	flhD	-	[GEA, HIBSCS]	Weak	
AcrR	marA	-	[BPP, GEA, HIBSCS]	Strong	
AcrR	marR	-	[BPP, GEA, HIBSCS]	Strong	
AcrR	soxR	-	[BPP, GEA, HIBSCS]	Strong	
AcrR	soxS	-	[BPP, GEA, HIBSCS]	Strong	
Ada	ada	+	[BPP, GEA, HIBSCS, SM]	Strong	
Ada	ada	-	[BPP, GEA, HIBSCS, SM]	Strong	
Ada	aidB	+	[BPP, GEA, HIBSCS]	Strong	
AdiY	gadX	+	[BPP]	Strong	
AgaR	agaR	-	[BPP, GEA, HIBSCS]	Strong	
AidB	aidB	-	[BPP, GEA]	Strong	
AlaS	alaS	-	[BPP, GEA]	Strong	
AllR	allS	-	[BCE, BPP, GEA, SM]	Weak	
AlsR	alsR	-	[GEA, GS]	Weak	
AraC	araC	+	[BPP, GEA, HIBSCS, SM]	Strong	
AraC	araC	+-	[BPP, GEA, HIBSCS, SM]	Strong	
AraC	araC	-	[BCE, BPP, GEA, HIBSCS, SM]	Weak	
ArcA	appY	+	[AIBSCS]	Weak	
ArcA	betI	-	[BCE, GEA]	Weak	
ArcA	dpiA	+	[AIBSCS]	Weak	
ArcA	fnr	-	[GEA]	Weak	
ArcA	gadE	+	[BPP, GEA]	Strong	
ArcA	gadX	+	[AIBSCS, GEA]	Weak	
ArcA	lldR	-	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
ArcA	puuR	-	[AIBSCS, GEA]	Weak	
ArcA	xylR	+	[AIBSCS, GEA]	Weak	
ArgP	argP	-	[GEA, HIBSCS, IC]	Weak	
ArgP	dnaA	+	[BPP, GEA, IC]	Strong	
ArgR	argR	-	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
ArsR	arsR	-	[AIBSCS, BPP, GEA]	Weak	
AscG	prpR	-	[AIBSCS, BPP, GEA]	Weak	
AsnC	asnC	-	[AIBSCS, GEA]	Weak	
BCCP	accB	-	[GEA, IMP]	Weak	
BaeR	baeR	+	[AIBSCS, BPP, GEA]	Weak	
BasR	csgD	+	[BPP, GEA, HIBSCS]	Strong	
BasR	putA	-	[BPP, HIBSCS]	Strong	
BasR	qseB	+	[BPP, GEA]	Strong	
BetI	betI	-	[BPP, GEA, GS, HIBSCS]	Strong	
CRP	araC	+	[BPP, GEA, HIBSCS, SM]	Strong	
CRP	caiF	+	[BCE, GEA]	Weak	
CRP	chbR	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
CRP	comR	-	[BPP, GEA, HIBSCS]	Strong	
CRP	crp	+	[BPP, HIBSCS, SM]	Strong	
CRP	crp	-	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
CRP	csgD	+	[AIBSCS, GEA]	Weak	
CRP	csqR	+-	[BPP, GEA, MCIBSPD]	Strong	
CRP	cytR	+-	[BPP, GEA, HIBSCS]	Strong	
CRP	dcuR	+	[BPP, HIBSCS]	Strong	
CRP	dgoR	+	[AIBSCS, BPP, GEA, SM]	Weak	
CRP	dpiA	-	[AIBSCS]	Weak	
CRP	exuR	-	[GEA, HIBSCS]	Weak	
CRP	feaR	+	[HIBSCS]	Weak	
CRP	fis	+	[AIBSCS, GEA]	Weak	
CRP	fis	+-	[BPP, GEA]	Strong	
CRP	flhC	+	[BPP, GEA, HIBSCS]	Strong	
CRP	flhD	+	[BPP, GEA, HIBSCS]	Strong	
CRP	fucR	+	[AIBSCS, BPP, GEA, SM]	Weak	
CRP	fur	+	[HIBSCS, SM]	Weak	
CRP	gadE	-	[BPP, HIBSCS]	Strong	
CRP	gadX	-	[GEA, HIBSCS]	Weak	
CRP	galS	+	[AIBSCS, BCE, GEA, HIBSCS]	Weak	
CRP	glcC	+	[AIBSCS, GEA]	Weak	
CRP	glnG	+	[HIBSCS]	Weak	
CRP	glnG	-	[AIBSCS, BPP, GEA]	Weak	
CRP	glpR	+	[BPP, GEA, HIBSCS]	Strong	
CRP	gutM	+	[AIBSCS, GEA]	Weak	
CRP	hupA	+	[BPP, GEA]	Strong	
CRP	hupB	+	[BPP, GEA]	Strong	
CRP	hyfR	+	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	idnR	+	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	lacI	+	[BPP, GEA, HIBSCS]	Strong	
CRP	lsrR	+	[BPP, GEA, HIBSCS, SM]	Strong	
CRP	malI	+	[AIBSCS, BCE, BPP, GEA, SM]	Weak	
CRP	malI	-	[AIBSCS, BPP, GEA, SM]	Weak	
CRP	malT	+	[BPP, GEA, HIBSCS]	Strong	
CRP	marA	+	[AIBSCS, GEA, IMP]	Weak	
CRP	marR	+	[AIBSCS, GEA, IMP]	Weak	
CRP	mazE	+	[BPP, HIBSCS, SM]	Strong	
CRP	mazF	+	[BPP, HIBSCS, SM]	Strong	
CRP	melR	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
CRP	mhpR	+	[BPP, GEA, HIBSCS]	Strong	
CRP	mlc	+	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	mlc	-	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	nagC	+-	[BCE, BPP, GEA, HIBSCS]	Weak	
CRP	ompR	+	[BPP, HIBSCS, SM]	Strong	
CRP	ompR	-	[BPP, HIBSCS, SM]	Strong	
CRP	oxyR	+	[GEA, HIBSCS]	Weak	
CRP	pdhR	+	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	prpR	+	[BPP, GEA, HIBSCS, SM]	Strong	
CRP	puuR	-	[HIBSCS, IEP]	Weak	
CRP	rbsR	+	[AIBSCS, GEA]	Weak	
CRP	rhaR	+	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
CRP	rhaS	+	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
CRP	srlR	+	[AIBSCS, GEA]	Weak	
CRP	tdcA	+	[BCE, BPP, GEA, HIBSCS, SM]	Weak	
CRP	uxuR	+	[GEA, HIBSCS]	Weak	
CRP	xylR	+	[AIBSCS, GEA, HIBSCS]	Weak	
CRP	yiaJ	-	[BPP, GEA, HIBSCS]	Strong	
CRP	zraR	+	[AIBSCS, GEA]	Weak	
CadC	cadC	+	[GEA]	Weak	
CdaR	cdaR	+	[GEA]	Weak	
CecR	cecR	-	[BPP, GEA, GS, HIBSCS]	Strong	
ChbR	chbR	+-	[BPP, GEA]	Strong	
CpxR	baeR	+	[BPP, GEA, IC]	Strong	
CpxR	cpxR	+	[BPP, GEA, HIBSCS]	Strong	
CpxR	csgD	-	[BPP, GEA, HIBSCS]	Strong	
CpxR	marA	+	[BPP, GEA, HIBSCS]	Strong	
CpxR	marR	+	[BPP, GEA, HIBSCS]	Strong	
Cra	betI	+	[GEA]	Weak	
Cra	crp	+	[BPP, GEA, SM]	Strong	
Cra	csgD	+	[AIBSCS, BPP, GEA, SM]	Weak	
Cra	glcC	-	[AIBSCS, GEA]	Weak	
Cra	marA	-	[AIBSCS, GEA]	Weak	
Cra	marR	-	[AIBSCS, GEA]	Weak	
Cra	pdeL	-	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
Cra	pdhR	-	[AIBSCS, GEA]	Weak	
CsgD	csgD	+	[BPP, GEA, HIBSCS]	Strong	
CsgD	fliZ	-	[AIBSCS, BPP]	Weak	
CspA	hns	+	[BPP]	Strong	
CsqR	csqR	-	[BPP, GEA, GS]	Strong	
CusR	cusR	+	[BPP, GEA, HIBSCS]	Strong	
CynR	cynR	-	[BPP, HIBSCS]	Strong	
CysB	cbl	+	[BPP, GEA]	Strong	
CysB	cysB	-	[HIBSCS]	Weak	
CytR	cytR	-	[BPP, GEA, HIBSCS, IC]	Strong	
Dan	ttdR	+	[BPP]	Strong	
DcuR	dpiA	+	[BPP, HIBSCS]	Strong	
DgoR	dgoR	-	[AIBSCS, AIBSPD, BPP, GEA, SM]	Weak	
DhaR	dhaR	-	[GEA]	Weak	
DinJ-YafQ	dinJ	-	[BPP, HIBSCS, SM]	Strong	
DinJ-YafQ	yafQ	-	[BPP, HIBSCS, SM]	Strong	
DnaA	dnaA	+-	[BPP, SM]	Strong	
DnaA	dnaA	-	[BPP, GEA]	Strong	
DpiA	appY	-	[GEA, HIBSCS]	Weak	
DpiA	dpiA	+	[BPP, GEA, HIBSCS]	Strong	
DsdC	dsdC	-	[GEA]	Weak	
EvgA	evgA	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
EvgA	gadE	+	[BPP, GEA]	Strong	
EvgA	ydeO	+	[AIBSCS, BPP, GEA]	Weak	
ExuR	exuR	-	[BPP, GEA, HIBSCS]	Strong	
ExuR	uxuR	-	[AIBSCS, GEA]	Weak	
FNR	arcA	+	[GEA, HIBSCS]	Weak	
FNR	arcA	-	[GEA, HIBSCS]	Weak	
FNR	cadC	+	[AIBSCS, GEA]	Weak	
FNR	caiF	+	[BCE, GEA]	Weak	
FNR	dcuR	+	[AIBSCS, GEA]	Weak	
FNR	dpiA	-	[AIBSCS]	Weak	
FNR	fhlA	+	[BCE, BPP, GEA]	Weak	
FNR	fnr	-	[BCE, BPP, GEA, HIBSCS]	Weak	
FNR	gadW	-	[AIBSCS, GEA]	Weak	
FNR	gadX	-	[AIBSCS, GEA]	Weak	
FNR	hyfR	-	[GEA, HIBSCS]	Weak	
FNR	nac	-	[GEA]	Weak	
FNR	narL	-	[BCE, BPP, HIBSCS]	Weak	
FNR	nfeR	+	[AIBSCS, GEA]	Weak	
FNR	nikR	+	[GEA, HIBSCS, SM]	Weak	
FNR	pdhR	+-	[AIBSCS, BCE, GEA]	Weak	
FNR	soxR	-	[GEA]	Weak	
FNR	soxS	-	[GEA]	Weak	
FNR	tdcA	+	[AIBSCS, GEA]	Weak	
FNR	yeiL	-	[GEA, HIBSCS]	Weak	
FadR	accB	+	[AIBSCS, BPP, GEA]	Weak	
FadR	fadR	+	[AIBSCS]	Weak	
FadR	iclR	+	[BPP, GEA, SM]	Strong	
FhlA	fhlA	+	[BPP, GEA, HIBSCS]	Strong	
FhlA	hyfR	+	[GEA]	Weak	
Fis	crp	-	[BPP, GEA, HIBSCS]	Strong	
Fis	cspA	+	[AIBSCS, BPP, GEA]	Weak	
Fis	fis	-	[BPP, GEA, HIBSCS, SM]	Strong	
Fis	gadX	-	[AIBSCS, GEA]	Weak	
Fis	glcC	-	[AIBSCS, GEA]	Weak	
Fis	glnG	+	[AIBSCS, BPP, GEA]	Weak	
Fis	hns	+	[BPP]	Strong	
Fis	hupA	+	[BPP, GEA]	Strong	
Fis	hupB	-	[BPP, GEA]	Strong	
Fis	marA	+	[BPP, GEA, SM]	Strong	
Fis	marR	+	[BPP, GEA, SM]	Strong	
Fis	mazE	+	[BPP, GEA, SM]	Strong	
Fis	mazF	+	[BPP, GEA, SM]	Strong	
Fis	xylR	-	[AIBSCS, GEA]	Weak	
FlhDC	fliZ	+	[BPP, GEA, HIBSCS, SM]	Strong	
FliZ	csgD	-	[BPP, GEA]	Strong	
FliZ	flhC	-	[BPP, GEA]	Strong	
FliZ	flhD	-	[BPP, GEA]	Strong	
FliZ	gadE	-	[BPP, GEA, SM]	Strong	
FliZ	mlrA	-	[BPP, GEA, SM]	Strong	
FucR	fucR	+	[GEA]	Weak	
Fur	flhC	-	[AIBSCS]	Weak	
Fur	flhD	-	[AIBSCS]	Weak	
Fur	fnr	-	[GEA]	Weak	
Fur	fur	-	[BPP, HIBSCS]	Strong	
Fur	metJ	-	[AIBSCS]	Weak	
Fur	nac	-	[GEA]	Weak	
Fur	purR	-	[AIBSCS]	Weak	
Fur	soxR	-	[GEA]	Weak	
Fur	soxS	-	[GEA]	Weak	
GadE	gadE	+	[BPP, GEA, HIBSCS]	Strong	
GadE	gadW	+	[BPP, GEA]	Strong	
GadE	gadX	+	[BPP, GEA]	Strong	
GadE	lrp	+	[GEA]	Weak	
GadE	rcsA	+	[BPP, GEA]	Strong	
GadE-RcsB	gadX	+	[BPP, CEUMA, GEA, HIBSCS, IHBCE, RE, SM]	Strong	
GadW	gadE	+	[AIBSCS, GEA, HIBSCS]	Weak	
GadW	gadW	-	[GEA]	Weak	
GadW	gadX	+-	[BPP, GEA, HIBSCS]	Strong	
GadW	gadX	-	[GEA]	Weak	
GadX	gadE	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
GadX	gadW	+	[GEA]	Weak	
GadX	gadW	-	[CEUMA, GEA, IHBCE, RE]	null	
GadX	gadX	+	[BPP, GEA, HIBSCS]	Strong	
GadX	hns	+	[GEA]	Weak	
GalR	galR	-	[BPP, GEA, HIBSCS]	Strong	
GalR	galS	-	[GEA, HIBSCS]	Weak	
GalS	galR	-	[GEA, HIBSCS]	Weak	
GalS	galS	-	[BCE, GEA]	Weak	
GcvA	gcvA	-	[AIBSCS, BCE, BPP, GEA, HIBSCS, IC, SM]	Weak	
GlcC	glcC	-	[BCE, GEA, SM]	Weak	
GntR	idnR	-	[AIBSCS, GEA, HIBSCS]	Weak	
GutM	gutM	+	[GEA]	Weak	
GutM	srlR	+	[GEA]	Weak	
H-NS	adiY	-	[BPP]	Strong	
H-NS	appY	-	[BPP, GEA]	Strong	
H-NS	bglJ	-	[BPP]	Strong	
H-NS	bolA	-	[GEA]	Weak	
H-NS	cadC	-	[BPP]	Strong	
H-NS	caiF	-	[GEA]	Weak	
H-NS	csgD	-	[BPP, GEA]	Strong	
H-NS	cspA	-	[AIBSCS, BPP, GEA]	Weak	
H-NS	evgA	-	[BPP]	Strong	
H-NS	flhC	+	[BPP, GEA]	Strong	
H-NS	flhD	+	[BPP, GEA]	Strong	
H-NS	fliZ	+	[GEA, IMP]	Weak	
H-NS	gadE	-	[BPP]	Strong	
H-NS	gadW	-	[BPP, GEA]	Strong	
H-NS	gadX	-	[BPP, GEA]	Strong	
H-NS	gutM	+	[GEA]	Weak	
H-NS	hdfR	-	[BPP]	Strong	
H-NS	hns	-	[BPP, GEA, HIBSCS]	Strong	
H-NS	leuO	-	[BPP, GEA, HIBSCS]	Strong	
H-NS	lrp	-	[BPP, GEA]	Strong	
H-NS	mazE	+	[GEA]	Weak	
H-NS	mazF	+	[GEA]	Weak	
H-NS	nhaR	-	[GEA]	Weak	
H-NS	rcsA	-	[GEA, ICWHO]	Weak	
H-NS	rcsB	-	[BPP]	Strong	
H-NS	srlR	+	[GEA]	Weak	
H-NS	stpA	-	[BCE, BPP, GEA]	Weak	
H-NS	ydeO	-	[BPP]	Strong	
H-NS	yjjQ	-	[BPP]	Strong	
HcaR	hcaR	-	[AIBSCS, BPP, GEA]	Weak	
HdfR	flhC	-	[BPP, GEA]	Strong	
HdfR	flhD	-	[BPP, GEA]	Strong	
HigA	higA	-	[BPP, IHBCE]	Strong	
HigA	higB	-	[BPP, IHBCE]	Strong	
HigB-HigA	higA	-	[BPP, IHBCE]	Strong	
HigB-HigA	higB	-	[BPP, IHBCE]	Strong	
HipAB	hipA	-	[BPP, GEA, HIBSCS]	Strong	
HipAB	hipB	-	[BPP, GEA, HIBSCS]	Strong	
HipAB	mazE	-	[BPP, GEA]	Strong	
HipAB	mazF	-	[BPP, GEA]	Strong	
HipB	hipA	-	[BPP, GEA, HIBSCS]	Strong	
HipB	hipB	-	[BPP, GEA, HIBSCS]	Strong	
HipB	mazE	-	[AIBSCS, BPP, GEA]	Weak	
HipB	mazF	-	[AIBSCS, BPP, GEA]	Weak	
HprR	cusR	+	[BPP, HIBSCS]	Strong	
HyfR	hyfR	+	[AIBSCS, GEA]	Weak	
IHF	csgD	+	[BPP, GEA]	Strong	
IHF	fhlA	+	[BPP, GEA, HIBSCS]	Strong	
IHF	fis	+	[BPP, GEA, HIBSCS, SM]	Strong	
IHF	flhC	-	[HIBSCS]	Weak	
IHF	flhD	-	[HIBSCS]	Weak	
IHF	fliZ	-	[GEA, IHBCE, SM]	Weak	
IHF	fnr	+	[BPP, GEA, SM]	Strong	
IHF	hipA	+	[HIBSCS]	Weak	
IHF	hipB	+	[HIBSCS]	Weak	
IHF	ihfA	-	[BPP, HIBSCS]	Strong	
IHF	ihfB	-	[BPP, GEA]	Strong	
IHF	ompR	-	[BPP, SM]	Strong	
IHF	tdcA	+	[BCE, BPP, HIBSCS, SM]	Weak	
IHF	yeiL	+	[GEA, HIBSCS]	Weak	
IHF	yiaJ	-	[BPP, HIBSCS]	Strong	
IclR	iclR	-	[BPP, GEA, HIBSCS]	Strong	
IdnR	idnR	+	[AIBSCS, GEA]	Weak	
IlvY	ilvY	-	[BCE, BPP, GEA, HIBSCS, IC]	Weak	
IscR	iscR	-	[BPP, GEA, SM]	Strong	
LeuO	bglJ	+	[BPP]	Strong	
LeuO	cadC	-	[GEA]	Weak	
LeuO	leuO	+	[BPP, GEA, IC]	Strong	
LeuO	leuO	+-	[BPP, GEA, IC]	Strong	
LeuO	yjjQ	+	[BPP]	Strong	
LexA	dinJ	-	[AIBSCS, GEA]	Weak	
LexA	lexA	-	[BPP, HIBSCS]	Strong	
LexA	uvrY	-	[AIBSCS, GEA]	Weak	
LexA	yafQ	-	[AIBSCS, GEA]	Weak	
LldR	lldR	+-	[AIBSCS, BPP, GEA, SM]	Weak	
LldR	lldR	-	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
LrhA	flhC	-	[BPP, GEA]	Strong	
LrhA	flhD	-	[BPP, GEA]	Strong	
LrhA	leuO	+	[BPP, GEA]	Strong	
LrhA	lrhA	+	[BPP, GEA]	Strong	
Lrp	aidB	-	[BPP, HIBSCS]	Strong	
Lrp	lrp	-	[AIBSCS, BCE, GEA, HIBSCS, SM]	Weak	
Lrp	malT	+	[GEA]	Weak	
Lrp	stpA	+	[BCE, BPP, GEA, HIBSCS]	Weak	
Lrp	yeiL	+	[GEA, HIBSCS]	Weak	
LsrR	lsrR	-	[BPP, GEA, SM]	Strong	
LysR	lysR	-	[GEA]	Weak	
MalI	malI	-	[BCE, GEA, SM]	Weak	
MarA	decR	+	[AIBSCS]	Weak	
MarA	marA	+	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
MarA	marR	+	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
MarA	putA	+	[GEA]	Weak	
MarA	rob	-	[BPP, GEA, HIBSCS, SM]	Strong	
MarR	marA	-	[AIBSCS, BPP, GEA, GS, HIBSCS, SM]	Weak	
MarR	marR	-	[AIBSCS, BPP, GEA, GS, HIBSCS, SM]	Weak	
MatA	ecpR	+	[BPP]	Strong	
MatA	flhC	-	[BPP, GEA]	Strong	
MatA	flhD	-	[BPP, GEA]	Strong	
MatA	fliZ	-	[BPP]	Strong	
MazE	mazE	-	[BCE, GEA, SM]	Weak	
MazE	mazF	-	[BCE, GEA, SM]	Weak	
MazE-MazF	mazE	-	[BCE, GEA, SM]	Weak	
MazE-MazF	mazF	-	[BCE, GEA, SM]	Weak	
MelR	melR	+	[BPP, GEA, SM]	Strong	
MelR	melR	-	[BPP, GEA, HIBSCS, SM]	Strong	
MetJ	metR	-	[BPP]	Strong	
MetR	metR	-	[BPP, GEA, HIBSCS]	Strong	
Mlc	malT	-	[BCE, GEA, HIBSCS]	Weak	
Mlc	mlc	-	[BCE, GEA, HIBSCS]	Weak	
MlrA	cadC	+	[BPP, HIBSCS]	Strong	
MlrA	csgD	+	[BPP, GEA]	Strong	
MngR	mngR	-	[BPP, GEA, HIBSCS]	Strong	
ModE	narL	+	[BPP, GEA, HIBSCS]	Strong	
MprA	mprA	-	[BPP]	Strong	
MqsA	csgD	-	[BPP, GEA, HIBSCS]	Strong	
MqsA	mqsA	-	[BPP, HIBSCS, IHBCE]	Strong	
MraZ	mraZ	-	[AIBSCS, BPP, GEA, SM]	Weak	
MurR	murR	+-	[GEA, HIBSCS]	Weak	
Nac	asnC	-	[GEA, HIBSCS]	Weak	
Nac	feaR	+	[IHBCE]	Weak	
Nac	nac	-	[BPP, GEA, HIBSCS]	Strong	
NagC	chbR	-	[AIBSCS, BPP, GEA, HIBSCS, SM]	Weak	
NagC	creB	-	[AIBSCS]	Weak	
NagC	nagC	-	[BPP, GEA, SM]	Strong	
NarL	caiF	-	[GEA]	Weak	
NarL	dcuR	-	[BPP, GEA, HIBSCS]	Strong	
NarL	dpiA	-	[AIBSCS]	Weak	
NarL	nikR	-	[GEA]	Weak	
NemR	nemR	-	[AIBSCS, BPP, GEA]	Weak	
NfeR	nfeR	-	[BPP, GEA, HIBSCS, SM]	Strong	
NhaR	nhaR	+	[BCE, BPP, GEA]	Weak	
NikR	nikR	-	[BPP]	Strong	
NimR	nimR	-	[BPP, GEA, GS, ICWHO]	Strong	
NorR	norR	-	[AIBSCS, BPP, GEA]	Weak	
NsrR	dsdC	-	[GEA, HIBSCS]	Weak	
NsrR	feaR	-	[GEA, HIBSCS]	Weak	
NsrR	fhlA	-	[GEA, HIBSCS]	Weak	
NsrR	fliZ	-	[GEA, HIBSCS, SM]	Weak	
NsrR	ihfA	-	[GEA, HIBSCS]	Weak	
NsrR	lrp	-	[GEA, HIBSCS]	Weak	
NsrR	norR	-	[GEA, HIBSCS]	Weak	
NtrC	cbl	+	[GEA]	Weak	
NtrC	glnG	+	[BPP, GEA, HIBSCS, SM]	Strong	
NtrC	glnG	-	[BPP, GEA, HIBSCS, SM]	Strong	
NtrC	nac	+	[HIBSCS]	Weak	
OmpR	bolA	-	[BPP, HIBSCS]	Strong	
OmpR	cadC	-	[BPP, GEA]	Strong	
OmpR	csgD	+	[BPP, GEA, HIBSCS]	Strong	
OmpR	flhC	-	[HIBSCS]	Weak	
OmpR	flhD	-	[HIBSCS]	Weak	
OxyR	fur	+	[BPP, CEUMA, GEA, HIBSCS, IHBCE, RE]	Strong	
OxyR	metR	+	[CEUMA, IHBCE, RE]	null	
OxyR	oxyR	-	[BPP, CEUMA, GEA, HIBSCS, IHBCE, RE]	Strong	
PaaX	paaX	-	[BPP, HIBSCS]	Strong	
PdeL	pdeL	+	[BPP, GEA, IHBCE]	Strong	
PdhR	mraZ	-	[AIBSCS, BPP, GEA]	Weak	
PdhR	pdhR	-	[AIBSCS, BCE, BPP, GEA, HIBSCS]	Weak	
PepA	pepA	-	[BPP]	Strong	
PgrR	tyrR	-	[BPP, GEA, IGI]	Strong	
PhoB	argP	+	[GEA, HIBSCS]	Weak	
PhoB	cra	-	[GEA]	Weak	
PhoB	cusR	+	[BPP, GEA, HIBSCS]	Strong	
PhoB	feaR	-	[BPP, GEA, HIBSCS]	Strong	
PhoB	gadW	+	[GEA]	Weak	
PhoB	gadX	+	[GEA]	Weak	
PhoB	phoB	+	[BPP, GEA, HIBSCS]	Strong	
PhoB	prpR	-	[BPP, GEA, HIBSCS]	Strong	
PhoB	ydfH	+	[BPP, GEA, HIBSCS]	Strong	
PhoP	cysB	+	[AIBSCS, HIBSCS]	Weak	
PhoP	gadE	+	[GEA, HIBSCS]	Weak	
PhoP	gadW	+	[BPP, GEA, HIBSCS]	Strong	
PhoP	phoP	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
PhoP	phoP	-	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
PhoP	rstA	+	[AIBSCS, BPP, GEA, HIBSCS]	Weak	
PhoP	treR	-	[BPP, GEA, HIBSCS, SM]	Strong	
PhoP	ydeO	-	[GEA, HIBSCS, SM]	Weak	
PrpR	prpR	-	[GEA, HIBSCS]	Weak	
PspF	pspF	-	[BCE, BPP, GEA]	Weak	
PurR	purR	-	[BCE, BPP, GEA, HIBSCS, SM]	Weak	
PutA	putA	-	[BPP, GEA, SM]	Strong	
PuuR	puuR	-	[BPP, GEA, IC, SM]	Strong	
QseB	feaR	+	[AIBSCS, GEA]	Weak	
QseB	feaR	-	[AIBSCS, GEA]	Weak	
QseB	flhC	+	[GEA]	Weak	
QseB	flhD	+	[GEA]	Weak	
QseB	qseB	+	[BPP, GEA]	Strong	
RbsR	rbsR	-	[AIBSCS, BPP, GEA]	Weak	
RcdA	csgD	+	[BPP, GEA, IC]	Strong	
RcnR	rcnR	-	[BPP, GEA]	Strong	
RcsAB	csgD	-	[GEA]	Weak	
RcsAB	flhC	-	[BPP, GEA, SM]	Strong	
RcsAB	flhD	-	[BPP, GEA, SM]	Strong	
RcsAB	rcsA	+	[AIBSCS, BCE, BPP, GEA, SM]	Weak	
RcsB	gadX	-	[BPP, GEA, IHBCE, SM]	Strong	
RcsB	ydeO	+	[GEA]	Weak	
RcsB-BglJ	leuO	+	[GEA, HIBSCS, SM]	Weak	
RelB	relB	-	[BPP, GEA, HIBSCS, SM]	Strong	
RelB	relE	-	[BPP, GEA, HIBSCS, SM]	Strong	
RelB-RelE	relB	-	[BPP, GEA, HIBSCS, SM]	Strong	
RelB-RelE	relE	-	[BPP, GEA, HIBSCS, SM]	Strong	
RhaR	rhaR	+	[BCE, BPP, GEA, HIBSCS]	Weak	
RhaR	rhaS	+	[BCE, BPP, GEA, HIBSCS]	Weak	
RhaS	rhaR	+	[BPP, GEA]	Strong	
RhaS	rhaR	?	[BPP, HIBSCS]	Strong	
RhaS	rhaS	+	[BPP, GEA]	Strong	
RhaS	rhaS	?	[BPP, HIBSCS]	Strong	
Rob	marA	+	[BPP, GEA, HIBSCS, SM]	Strong	
Rob	marR	+	[BPP, GEA, HIBSCS, SM]	Strong	
Rob	rob	-	[BPP, GEA, HIBSCS]	Strong	
RstA	csgD	-	[BPP, GEA, HIBSCS]	Strong	
RutR	gadW	-	[BPP, GEA]	Strong	
RutR	gadX	-	[BPP, GEA]	Strong	
RutR	nemR	-	[AIBSCS, BPP, GEA]	Weak	
RutR	rutR	-	[AIBSCS, BPP, GEA, SM]	Weak	
SdiA	gadW	+	[GEA]	Weak	
SgrR	sgrR	-	[BPP, GEA, HIBSCS, SM]	Strong	
SlyA	leuO	+	[AIBSCS, BPP, GEA]	Weak	
SoxR	soxR	-	[BPP, CEUMA, CHIP-SV, GEA, IHBCE, MSI, RE]	Strong	
SoxR	soxS	+	[BPP, CEUMA, GEA, IHBCE, RE]	Strong	
SoxS	decR	+	[CEUMA, IHBCE, RE]	null	
SoxS	fur	+	[BPP, CE, CEUMA, GEA, HIBSCS, IHBCE, RE]	Strong	
SoxS	marA	+	[BPP, GEA, HIBSCS]	Strong	
SoxS	marR	+	[BPP, GEA, HIBSCS]	Strong	
SoxS	rob	-	[BPP, HIBSCS]	Strong	
SoxS	soxS	-	[BPP, CEUMA, GEA, IHBCE, RE]	Strong	
SrlR	gutM	-	[GEA]	Weak	
SrlR	srlR	-	[GEA]	Weak	
StpA	leuO	-	[GEA]	Weak	
StpA	stpA	-	[GEA]	Weak	
SutR	fliZ	-	[AIBSCS, BPP, GEA]	Weak	
SutR	sutR	+	[BPP, GEA, HIBSCS]	Strong	
SutR	sutR	-	[BPP, GEA, HIBSCS]	Strong	
TdcA	tdcA	+	[BCE, GEA, SM]	Weak	
TdcR	tdcA	+	[BCE, SM]	Weak	
TorR	gadX	-	[AIBSCS, GEA]	Weak	
TorR	torR	-	[BCE, BPP, GEA, GS, HIBSCS, SM]	Weak	
TrpR	trpR	-	[BPP, GEA, HIBSCS]	Strong	
TyrR	tyrR	-	[GEA, HIBSCS]	Weak	
UidR	uidR	-	[GEA]	Weak	
UxuR	exuR	-	[BPP, GEA, HIBSCS]	Strong	
UxuR	uxuR	-	[AIBSCS, GEA]	Weak	
XylR	araC	-	[AIBSCS, BPP, GEA]	Weak	
XylR	xylR	+	[BPP, GEA, HIBSCS]	Strong	
YdeO	gadE	+	[BPP, GEA, IHBCE]	Strong	
YdeO	gadW	+	[BPP, GEA, IHBCE]	Strong	
YdeO	ydeO	-	[GEA]	Weak	
YefM	yefM	-	[BPP, GEA, HIBSCS]	Strong	
YefM	yoeB	-	[BPP, GEA, HIBSCS]	Strong	
YefM-YoeB	yefM	-	[BPP, GEA, HIBSCS]	Strong	
YefM-YoeB	yoeB	-	[BPP, GEA, HIBSCS]	Strong	
YeiL	yeiL	+	[GEA]	Weak	
YiaJ	yiaJ	-	[BCE, GEA]	Weak	
YjjQ	flhC	-	[AIBSCS, GEA, SM]	Weak	
YjjQ	flhD	-	[AIBSCS, GEA, SM]	Weak	
ZraR	zraR	+	[BPP, GEA, HIBSCS]	Strong